No, it is most certainly okay. Do you remember the datarate you chose for compression? You may look it up under the DCP tab after reopening the project.
The DCP-o-matic player uses a rather slow software decoder, per default, it is normal that there is some stuttering and droped frames when you play the DCP with audio.
What type of machine do you use? You would need a very fast multicore CPU to achieve full res decoding without dropped frames.
You may choose a lower decoding resolution to get a more fluid playback. Also, playback in dcp player is slowed down considerably if DCP-o-matic main application is running in the background, even when it is not actively encoding.
- Carsten